Validation of a Customized Bioinformatics Pipeline for a Clinical Next-Generation Sequencing Test Targeting Solid Tumor–Associated Variants - ScienceDirect
strand bias and orientation bias – GATK
IJMS | Free Full-Text | TP53 Targeted Deep Sequencing of Cell-Free DNA in Esophageal Squamous Cell Carcinoma Using Low-Quality Serum: Concordance with Tumor Mutation
Overview of Variant Calling Strategy. After filtering candidate variant... | Download Scientific Diagram
Filtering of VCF Files
Direct quantification of in vivo mutagenesis and carcinogenesis using duplex sequencing | PNAS
The use of technical replication for detection of low-level somatic mutations in next-generation sequencing | Nature Communications
Single duplex DNA sequencing with CODEC detects mutations with high sensitivity | Nature Genetics
Allele and strand bias for SNVs. This figure shows read distribution of... | Download Scientific Diagram
The effect of strand bias in Illumina short-read sequencing data | BMC Genomics | Full Text
Confusion regarding strand and other filters · Issue #62 · AstraZeneca-NGS/VarDictJava · GitHub
Aligned reads with strand biased errors. Hypothetical reads of two... | Download Scientific Diagram
Aligned reads with strand biased errors. Hypothetical reads of two... | Download Scientific Diagram
eVIDENCE: a practical variant filtering for low-frequency variants detection in cell-free DNA | Scientific Reports
Allele frequency, strand bias, genotype quality, and sequencing depth... | Download Scientific Diagram
Allele balance bias identifies systematic genotyping errors and false disease associations - Muyas - 2019 - Human Mutation - Wiley Online Library
Strand bias filter is failing for a hom alt in M2 · Issue #6211 · broadinstitute/gatk · GitHub
UVC: universality-based calling of small variants using pseudo-neural networks | bioRxiv
The effect of strand bias in Illumina short-read sequencing data | BMC Genomics | Full Text
Analysis of Assemblies and Alignments - Geneious Prime User Manual
Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats | Nature Communications
Filtering of VCF Files
Validation of a Customized Bioinformatics Pipeline for a Clinical Next-Generation Sequencing Test Targeting Solid Tumor–Associated Variants - ScienceDirect
